Selected publications from last 5 years
Sahlin. Strobealign: flexible seed size enables ultra-fast and accurate read alignment. Genome Biol. 2022. 23: 260.
Pomerantz, Sahlin et al. Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment. Nature Protocols, 2022.
Sahlin. Effective sequence similarity detection with strobemers. Genome Res. 2021. 31: 2080-2094.
Sahlin and Mäkinen. Accurate spliced alignment of long RNA sequencing reads. Bioinformatics, 2021 37:4643–4651.
Sahlin and Medvedev. Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis. Nat Commun 12, 2 (2021).
Sahlin and Medvedev. De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality Value-Based Algorithm, J. Comput. Biol. 2020 27:4, 472-484.
Sahlin, Tomaszkiewicz, Makova, and Medvedev. Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon. Nat Commun 9, 4601 (2018).